Novel approaches in MS characterization of highly modified synthetic RNA

In recent years, the demand for mass spectrometry (MS)-based approaches for structural characterization in quality control of oligonucleotide-based pharmaceuticals has increased increased significantly. Sense strand RNAs with >30 nucleotide building blocks and labile modifications such as N-acetylgalactosamine residues represent thereby a special challenge. We will present direct, robust and easy-to-use techniques to fully characterize the nucleotide sequence of highly modified single-stranded RNAs by top down tandem MS. This will include a case study for an N-acetylgalactosamine modified RNA sense strand. The approach can be applied on single strand level, as well as on siRNA duplex level in a single electrospray ionization MS (ESI-MS) experiment. Based on this technique, we also developed an efficient and highly sophisticated LC-MS/MS workflow for the characterization of product-related impurities in oligonucleotides such as methylation, and PS-PO and rC/rU substitution. This procedure allows us to reliably predict the modification sites in oligonucleotide impurities to support process development with important structural information.

ACF

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Execution time: 0.0017 seconds

Get to know our Speaker

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Execution time: 0.0016 seconds

ACF

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button_bg_color_gradient_typelinear
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button_bg_color_gradient_stops#2b87da 0%|#29c4a9 100%
button_bg_color_gradient_unit%
button_bg_color_gradient_overlays_imageoff
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button_bg_parallax_methodon
button_bg_sizecover
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button_bg_enable_video_mp4on
button_bg_enable_video_webmon
button_bg_allow_player_pauseoff
button_bg_video_pause_outside_viewporton
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button_icon_placementright
button_on_hoveron
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position_origin_atop_left
position_origin_ftop_left
position_origin_rtop_left
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custom_margin||0px||false|false
custom_padding||0px||false|false
filter_hue_rotate0deg
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animation_stylenone
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animation_intensity_zoom50%
animation_intensity_flip50%
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animation_speed_curveease-in-out
animation_repeatonce
hover_transition_duration300ms
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hover_transition_speed_curveease
link_option_url_new_windowoff
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sticky_offset_top0px
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sticky_transitionon
motion_trigger_startmiddle
hover_enabled0
title_css_text_shadow_stylenone
title_css_text_shadow_horizontal_length0em
title_css_text_shadow_vertical_length0em
title_css_text_shadow_blur_strength0em
title_css_text_shadow_colorrgba(0,0,0,0.4)
acf_label_css_text_shadow_stylenone
acf_label_css_text_shadow_horizontal_length0em
acf_label_css_text_shadow_vertical_length0em
acf_label_css_text_shadow_blur_strength0em
acf_label_css_text_shadow_colorrgba(0,0,0,0.4)
label_css_text_shadow_stylenone
label_css_text_shadow_horizontal_length0em
label_css_text_shadow_vertical_length0em
label_css_text_shadow_blur_strength0em
label_css_text_shadow_colorrgba(0,0,0,0.4)
text_before_css_text_shadow_stylenone
text_before_css_text_shadow_horizontal_length0em
text_before_css_text_shadow_vertical_length0em
text_before_css_text_shadow_blur_strength0em
text_before_css_text_shadow_colorrgba(0,0,0,0.4)
seperator_text_shadow_stylenone
seperator_text_shadow_horizontal_length0em
seperator_text_shadow_vertical_length0em
seperator_text_shadow_blur_strength0em
seperator_text_shadow_colorrgba(0,0,0,0.4)
relational_field_item_text_shadow_stylenone
relational_field_item_text_shadow_horizontal_length0em
relational_field_item_text_shadow_vertical_length0em
relational_field_item_text_shadow_blur_strength0em
relational_field_item_text_shadow_colorrgba(0,0,0,0.4)
button_text_shadow_stylenone
button_text_shadow_horizontal_length0em
button_text_shadow_vertical_length0em
button_text_shadow_blur_strength0em
button_text_shadow_colorrgba(0,0,0,0.4)
box_shadow_stylenone
box_shadow_colorrgba(0,0,0,0.3)
box_shadow_positionouter
box_shadow_style_buttonnone
box_shadow_color_buttonrgba(0,0,0,0.3)
box_shadow_position_buttonouter
text_shadow_stylenone
text_shadow_horizontal_length0em
text_shadow_vertical_length0em
text_shadow_blur_strength0em
text_shadow_colorrgba(0,0,0,0.4)
disabledoff
lockedoff
global_colors_info{"gcid-26ed69e5-024e-4d79-af60-a0cd8f862966":["label_css_text_color"]}

Giovanni Calderisi

Execution time: 0.0013 seconds

ACF

ID236700
keyfield_62ebe420a9c4a
labelSpeaker Title
namespeaker_repeater_0_speaker_title
prefixacf
typetext
valueProject Chemist QC
menu_order2
required0
conditional_logic0
parent236697
wrapperArray ( [width] => [class] => [id] => )
_namespeaker_title
_valid1
parent_repeaterfield_62ebe38ba9c47

Module Settings

custom_identifierACF Item
acf_namefield_62ebe420a9c4a
is_author_acf_fieldoff
post_object_acf_namenone
author_field_typeauthor_post
linked_user_acf_namenone
type_taxonomy_acf_namenone
acf_tagp
show_labeloff
label_seperator:
visibilityon
empty_value_optionhide_module
use_iconoff
icon_color#2d7abf
use_circleoff
circle_color#2d7abf
use_circle_borderoff
circle_border_color#2d7abf
use_icon_font_sizeoff
icon_image_placementleft
image_mobile_stackinginitial
return_formatarray
image_link_urloff
image_link_url_acf_namenone
checkbox_stylearray
checkbox_radio_returnlabel
checkbox_radio_value_typeoff
checkbox_radio_linkoff
link_buttonoff
email_subjectnone
email_body_afternone
add_css_classoff
add_css_loop_layoutoff
add_css_class_selectorbody
link_new_taboff
link_name_acfoff
link_name_acf_namenone
url_link_iconoff
image_sizefull
true_false_conditionoff
true_false_condition_css_selector.et_pb_button
true_false_text_trueTrue
true_false_text_falseFalse
is_audiooff
is_videooff
video_loopon
video_autoplayon
make_video_backgroundoff
video_background_sizecover
is_oembed_videooff
defer_videooff
defer_video_iconI||divi||400
video_icon_font_sizeoff
pretify_textoff
pretify_seperator,
number_decimal.
show_value_if_zerooff
text_imageoff
is_options_pageoff
is_repeater_loop_layouton
linked_post_stylecustom
link_post_seperator,
link_to_post_objecton
link_to_post_object_new_taboff
loop_layoutnone
columns4
columns_tablet2
columns_mobile1
user_field_returndisplay_name
link_to_author_pageoff
repeater_dyn_btn_acfnone
text_before_positionsame_line
label_positionsame_line
vertical_alignmentmiddle
admin_labelDM - Speaker Title
_builder_version4.18.0
_module_presetdefault
title_css_font_size14px
title_css_letter_spacing0px
title_css_line_height1em
acf_label_css_font_size14px
acf_label_css_letter_spacing0px
acf_label_css_line_height1em
label_css_font|700|||||||
label_css_text_color#2d7abf
label_css_letter_spacing0px
text_before_css_font_size14px
text_before_css_letter_spacing0px
text_before_css_line_height1em
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seperator_line_height1em
relational_field_item_font_size14px
relational_field_item_letter_spacing0px
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background_enable_coloron
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background_color_gradient_repeatoff
background_color_gradient_typelinear
background_color_gradient_direction180deg
background_color_gradient_direction_radialcenter
background_color_gradient_stops#2b87da 0%|#29c4a9 100%
background_color_gradient_unit%
background_color_gradient_overlays_imageoff
background_color_gradient_start#2b87da
background_color_gradient_start_position0%
background_color_gradient_end#29c4a9
background_color_gradient_end_position100%
background_enable_imageon
parallaxoff
parallax_methodon
background_sizecover
background_image_widthauto
background_image_heightauto
background_positioncenter
background_horizontal_offset0
background_vertical_offset0
background_repeatno-repeat
background_blendnormal
background_enable_video_mp4on
background_enable_video_webmon
allow_player_pauseoff
background_video_pause_outside_viewporton
background_enable_pattern_styleoff
background_pattern_stylepolka-dots
background_pattern_colorrgba(0,0,0,0.2)
background_pattern_sizeinitial
background_pattern_widthauto
background_pattern_heightauto
background_pattern_repeat_origintop_left
background_pattern_horizontal_offset0
background_pattern_vertical_offset0
background_pattern_repeatrepeat
background_pattern_blend_modenormal
background_enable_mask_styleoff
background_mask_stylelayer-blob
background_mask_color#ffffff
background_mask_aspect_ratiolandscape
background_mask_sizestretch
background_mask_widthauto
background_mask_heightauto
background_mask_positioncenter
background_mask_horizontal_offset0
background_mask_vertical_offset0
background_mask_blend_modenormal
custom_buttonoff
button_text_size14
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button_bg_color_gradient_typelinear
button_bg_color_gradient_direction180deg
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button_bg_color_gradient_stops#2b87da 0%|#29c4a9 100%
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button_bg_color_gradient_end#29c4a9
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button_bg_enable_video_mp4on
button_bg_enable_video_webmon
button_bg_allow_player_pauseoff
button_bg_video_pause_outside_viewporton
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button_on_hoveron
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custom_padding0px||||false|false
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animation_intensity_zoom50%
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animation_speed_curveease-in-out
animation_repeatonce
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hover_transition_speed_curveease
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sticky_limit_bottomnone
sticky_offset_surroundingon
sticky_transitionon
motion_trigger_startmiddle
hover_enabled0
title_css_text_shadow_stylenone
title_css_text_shadow_horizontal_length0em
title_css_text_shadow_vertical_length0em
title_css_text_shadow_blur_strength0em
title_css_text_shadow_colorrgba(0,0,0,0.4)
acf_label_css_text_shadow_stylenone
acf_label_css_text_shadow_horizontal_length0em
acf_label_css_text_shadow_vertical_length0em
acf_label_css_text_shadow_blur_strength0em
acf_label_css_text_shadow_colorrgba(0,0,0,0.4)
label_css_text_shadow_stylenone
label_css_text_shadow_horizontal_length0em
label_css_text_shadow_vertical_length0em
label_css_text_shadow_blur_strength0em
label_css_text_shadow_colorrgba(0,0,0,0.4)
text_before_css_text_shadow_stylenone
text_before_css_text_shadow_horizontal_length0em
text_before_css_text_shadow_vertical_length0em
text_before_css_text_shadow_blur_strength0em
text_before_css_text_shadow_colorrgba(0,0,0,0.4)
seperator_text_shadow_stylenone
seperator_text_shadow_horizontal_length0em
seperator_text_shadow_vertical_length0em
seperator_text_shadow_blur_strength0em
seperator_text_shadow_colorrgba(0,0,0,0.4)
relational_field_item_text_shadow_stylenone
relational_field_item_text_shadow_horizontal_length0em
relational_field_item_text_shadow_vertical_length0em
relational_field_item_text_shadow_blur_strength0em
relational_field_item_text_shadow_colorrgba(0,0,0,0.4)
button_text_shadow_stylenone
button_text_shadow_horizontal_length0em
button_text_shadow_vertical_length0em
button_text_shadow_blur_strength0em
button_text_shadow_colorrgba(0,0,0,0.4)
box_shadow_stylenone
box_shadow_colorrgba(0,0,0,0.3)
box_shadow_positionouter
box_shadow_style_buttonnone
box_shadow_color_buttonrgba(0,0,0,0.3)
box_shadow_position_buttonouter
text_shadow_stylenone
text_shadow_horizontal_length0em
text_shadow_vertical_length0em
text_shadow_blur_strength0em
text_shadow_colorrgba(0,0,0,0.4)
disabledoff
lockedoff
global_colors_info{"gcid-f71e32a6-6d24-4beb-adc3-f38b1f4074ed":["label_css_text_color"]}

Project Chemist QC

Execution time: 0.0014 seconds

ACF

ID237387
keyfield_633152eb435af
labelSpeaker Bio
namespeaker_repeater_0_speaker_bio
prefixacf
typewysiwyg
value<p>Giovanni joined Bachem in Bubendorf (Switzerland) in September 2020 as an expert for mass spectrometry (MS) of oligonucleotides. In his position as a project chemist he is responsible for establishing routine workflows the for characterization of oligonucleotides and peptides by ultra-high resolution MS. Giovanni received his Ph.D. in chemistry with a focus on biomolecular MS at the University of Innsbruck, Austria.</p>
menu_order3
required0
conditional_logic0
parent236697
wrapperArray ( [width] => [class] => [id] => )
delay0
tabsall
toolbarbasic
media_upload0
_namespeaker_bio
_valid1
parent_repeaterfield_62ebe38ba9c47

Module Settings

custom_identifierACF Item
acf_namefield_633152eb435af
is_author_acf_fieldoff
post_object_acf_namenone
author_field_typeauthor_post
linked_user_acf_namenone
type_taxonomy_acf_namenone
acf_tagp
show_labeloff
label_seperator:
visibilityon
empty_value_optionhide_module
use_iconoff
icon_color#2d7abf
use_circleoff
circle_color#2d7abf
use_circle_borderoff
circle_border_color#2d7abf
use_icon_font_sizeoff
icon_image_placementleft
image_mobile_stackinginitial
return_formatarray
image_link_urloff
image_link_url_acf_namenone
checkbox_stylearray
checkbox_radio_returnlabel
checkbox_radio_value_typeoff
checkbox_radio_linkoff
link_buttonoff
email_subjectnone
email_body_afternone
add_css_classoff
add_css_loop_layoutoff
add_css_class_selectorbody
link_new_taboff
link_name_acfoff
link_name_acf_namenone
url_link_iconoff
image_sizefull
true_false_conditionoff
true_false_condition_css_selector.et_pb_button
true_false_text_trueTrue
true_false_text_falseFalse
is_audiooff
is_videooff
video_loopon
video_autoplayon
make_video_backgroundoff
video_background_sizecover
is_oembed_videooff
defer_videooff
defer_video_iconI||divi||400
video_icon_font_sizeoff
pretify_textoff
pretify_seperator,
number_decimal.
show_value_if_zerooff
text_imageoff
is_options_pageoff
is_repeater_loop_layouton
linked_post_stylecustom
link_post_seperator,
link_to_post_objecton
link_to_post_object_new_taboff
loop_layoutnone
columns4
columns_tablet2
columns_mobile1
user_field_returndisplay_name
link_to_author_pageoff
repeater_dyn_btn_acfnone
text_before_positionsame_line
label_positionsame_line
vertical_alignmentmiddle
admin_labelDM - Speaker Bio
_builder_version4.18.0
_module_presetdefault
title_css_font_size14px
title_css_letter_spacing0px
title_css_line_height1em
acf_label_css_font_size14px
acf_label_css_letter_spacing0px
acf_label_css_line_height1em
label_css_font||||||||
label_css_letter_spacing0px
text_before_css_font_size14px
text_before_css_letter_spacing0px
text_before_css_line_height1em
seperator_font_size14px
seperator_letter_spacing0px
seperator_line_height1em
relational_field_item_font_size14px
relational_field_item_letter_spacing0px
relational_field_item_line_height1em
background_enable_coloron
use_background_color_gradientoff
background_color_gradient_repeatoff
background_color_gradient_typelinear
background_color_gradient_direction180deg
background_color_gradient_direction_radialcenter
background_color_gradient_stops#2b87da 0%|#29c4a9 100%
background_color_gradient_unit%
background_color_gradient_overlays_imageoff
background_color_gradient_start#2b87da
background_color_gradient_start_position0%
background_color_gradient_end#29c4a9
background_color_gradient_end_position100%
background_enable_imageon
parallaxoff
parallax_methodon
background_sizecover
background_image_widthauto
background_image_heightauto
background_positioncenter
background_horizontal_offset0
background_vertical_offset0
background_repeatno-repeat
background_blendnormal
background_enable_video_mp4on
background_enable_video_webmon
allow_player_pauseoff
background_video_pause_outside_viewporton
background_enable_pattern_styleoff
background_pattern_stylepolka-dots
background_pattern_colorrgba(0,0,0,0.2)
background_pattern_sizeinitial
background_pattern_widthauto
background_pattern_heightauto
background_pattern_repeat_origintop_left
background_pattern_horizontal_offset0
background_pattern_vertical_offset0
background_pattern_repeatrepeat
background_pattern_blend_modenormal
background_enable_mask_styleoff
background_mask_stylelayer-blob
background_mask_color#ffffff
background_mask_aspect_ratiolandscape
background_mask_sizestretch
background_mask_widthauto
background_mask_heightauto
background_mask_positioncenter
background_mask_horizontal_offset0
background_mask_vertical_offset0
background_mask_blend_modenormal
custom_buttonoff
button_text_size14
button_bg_use_color_gradientoff
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button_bg_color_gradient_typelinear
button_bg_color_gradient_direction180deg
button_bg_color_gradient_direction_radialcenter
button_bg_color_gradient_stops#2b87da 0%|#29c4a9 100%
button_bg_color_gradient_unit%
button_bg_color_gradient_overlays_imageoff
button_bg_color_gradient_start#2b87da
button_bg_color_gradient_start_position0%
button_bg_color_gradient_end#29c4a9
button_bg_color_gradient_end_position100%
button_bg_enable_imageon
button_bg_parallaxoff
button_bg_parallax_methodon
button_bg_sizecover
button_bg_image_widthauto
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button_bg_horizontal_offset0
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button_bg_repeatno-repeat
button_bg_blendnormal
button_bg_enable_video_mp4on
button_bg_enable_video_webmon
button_bg_allow_player_pauseoff
button_bg_video_pause_outside_viewporton
button_use_iconon
button_icon_placementright
button_on_hoveron
positioningnone
position_origin_atop_left
position_origin_ftop_left
position_origin_rtop_left
widthauto
max_widthnone
min_heightauto
heightauto
max_heightnone
custom_margin0px||||false|false
custom_padding0px||||false|false
filter_hue_rotate0deg
filter_saturate100%
filter_brightness100%
filter_contrast100%
filter_invert0%
filter_sepia0%
filter_opacity100%
filter_blur0px
mix_blend_modenormal
animation_stylenone
animation_directioncenter
animation_duration1000ms
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animation_intensity_zoom50%
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animation_starting_opacity0%
animation_speed_curveease-in-out
animation_repeatonce
hover_transition_duration300ms
hover_transition_delay0ms
hover_transition_speed_curveease
link_option_url_new_windowoff
sticky_positionnone
sticky_offset_top0px
sticky_offset_bottom0px
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sticky_limit_bottomnone
sticky_offset_surroundingon
sticky_transitionon
motion_trigger_startmiddle
hover_enabled0
title_css_text_shadow_stylenone
title_css_text_shadow_horizontal_length0em
title_css_text_shadow_vertical_length0em
title_css_text_shadow_blur_strength0em
title_css_text_shadow_colorrgba(0,0,0,0.4)
acf_label_css_text_shadow_stylenone
acf_label_css_text_shadow_horizontal_length0em
acf_label_css_text_shadow_vertical_length0em
acf_label_css_text_shadow_blur_strength0em
acf_label_css_text_shadow_colorrgba(0,0,0,0.4)
label_css_text_shadow_stylenone
label_css_text_shadow_horizontal_length0em
label_css_text_shadow_vertical_length0em
label_css_text_shadow_blur_strength0em
label_css_text_shadow_colorrgba(0,0,0,0.4)
text_before_css_text_shadow_stylenone
text_before_css_text_shadow_horizontal_length0em
text_before_css_text_shadow_vertical_length0em
text_before_css_text_shadow_blur_strength0em
text_before_css_text_shadow_colorrgba(0,0,0,0.4)
seperator_text_shadow_stylenone
seperator_text_shadow_horizontal_length0em
seperator_text_shadow_vertical_length0em
seperator_text_shadow_blur_strength0em
seperator_text_shadow_colorrgba(0,0,0,0.4)
relational_field_item_text_shadow_stylenone
relational_field_item_text_shadow_horizontal_length0em
relational_field_item_text_shadow_vertical_length0em
relational_field_item_text_shadow_blur_strength0em
relational_field_item_text_shadow_colorrgba(0,0,0,0.4)
button_text_shadow_stylenone
button_text_shadow_horizontal_length0em
button_text_shadow_vertical_length0em
button_text_shadow_blur_strength0em
button_text_shadow_colorrgba(0,0,0,0.4)
box_shadow_stylenone
box_shadow_colorrgba(0,0,0,0.3)
box_shadow_positionouter
box_shadow_style_buttonnone
box_shadow_color_buttonrgba(0,0,0,0.3)
box_shadow_position_buttonouter
text_shadow_stylenone
text_shadow_horizontal_length0em
text_shadow_vertical_length0em
text_shadow_blur_strength0em
text_shadow_colorrgba(0,0,0,0.4)
disabledoff
lockedoff
global_colors_info{}

Giovanni joined Bachem in Bubendorf (Switzerland) in September 2020 as an expert for mass spectrometry (MS) of oligonucleotides. In his position as a project chemist he is responsible for establishing routine workflows the for characterization of oligonucleotides and peptides by ultra-high resolution MS. Giovanni received his Ph.D. in chemistry with a focus on biomolecular MS at the University of Innsbruck, Austria.

Execution time: 0.0022 seconds

Execution time: 0.0004 seconds